I want to retrieve sequence corresponding to a set of regions defined
in a BED file. I tried to do this with the Table browser, but the
wrong sequence is returned.
I chose Nematode, C. elegans, ce4, mapping and sequencing tracks,
assembly, gold
This is the region I specified:
chrX:7537739-8302438
This is what I got back:
>ce4_gold_U41624.1 range=chrX:7509358-7555104 5'pad=0 3'pad=0
>strand=+ repeatMasking=none
Maybe this is the nearest gene? How can I get the exact sequence
specified. I found I can do this for a single region from a Get DNA
page, but I've got 3000 rows.
Thanks,
Julie
--
___________________________________
Dr. Julie Ahringer
The Gurdon Institute
University of Cambridge
Tennis Court Road
Cambridge CB2 1QN
UK
phone +44 1223 334142 (Office)
334144 (Lab)
fax +44 1223 334089
NOTE NEW EMAIL ADDRESS: [email protected]
http://www.gurdon.cam.ac.uk/~ahringerlab/
___________________________________
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
