Hi Sherry, Our table browser (http://genome.ucsc.edu/cgi-bin/hgTables) should help you obtain the CDS sequence in fasta format for all RefSeq genes in our database:
1. Go to the table browser and select your assembly of interest. 2. Select "RefSeq Genes" from the track pull-down menu. 3. Choose the output format to be "sequence" and click "get output". 4. Select the "genomic" button and then click "submit". 5. Configure your results as needed and click "get sequence". I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 7/29/10 8:37 AM, Dadgar, Sherry wrote: > Hello, > > Please let me know how to get a whole sequence of CDs for each input in the > database. I was able to get a fasta file for nucleotide sequences for RefSeq > genes from NCBI by clicking on each input but, unfortunately, I cannot find > the whole sequence of others. > > Looking forward to hearing from you! > > Thanks, > > Sherry Dadgar > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
