Hello Carlo, Please see the track's description page. To do this, open up the target assembly in the main browser and click on the track name. This link points to the track controls (top of page) with the methods, sources, credits underneath.
Please feel free to contact the mailing list support team again if you would like more assistance. Warm regards, Jen UCSC Genome Browser Support On 7/31/10 12:21 AM, Carlo Colantuoni wrote: > Hi there - > > Thanks a lot! > > This worked great for me, but I have an additional question: How do I get the > details of how the CpG islands in this table were determined (island > definition criteria etc.) > > Carlo > > -----Original Message----- > From: Vanessa Kirkup Swing [mailto:[email protected]] > Sent: Thursday, June 03, 2010 1:21 PM > To: Carlo Colantuoni > Cc: [email protected] > Subject: Re: [Genome] cpg island locations across the genome > > Dear Carlo, > > To download CpG Islands across the genome there is a great tool called the > table browser. > > To access the table browser click on "Tables" in the navigation bar. > 1) Select clade: "Mammal" > 2) Select genome: "Rat" > 3) Select group: "Expression and Regulation" > 4) Select track: "CpG Islands" > 5) Select "genome" > 6) For output format: select the output that interests you. > 7) For the output file: put the file name that you want saved. > 8) Click on "get outPut" > > For the other genomes you can follow the same procedure above. Note that the > group may just be "Expression" instead of "Expression and Regulation" when > looking at other genomes. > > For additional help there is the user's guide: > http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html and a tutorial: > http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml. > > Please contact the mailing list if you have further questions. > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > > ----- Original Message ----- > From: "Carlo Colantuoni"<[email protected]> > To: [email protected] > Cc: "Carlo Colantuoni"<[email protected]> > Sent: Tuesday, June 1, 2010 5:58:28 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] cpg island locations across the genome > > hi there, > > > > i am wondering if ucsc genome browser has a database of mapped cpg islands > across the genome (such as a track in the browser that I could download)? i > am most interested in rat, but would like to look at human and mouse too. i > am interested in downloading all the locations, not just searching one gene > for cpg islands. > > > > thanks, > > carlo > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
