Hello Henning, To do this, upload a simple BED file with the coordinates as a custom track. Then in the Table browser, select that custom track/table, make sure region = genome, then set output = sequence. This will retrieve genome sequence for just the regions in the custom track.
See this FAQ for this and the flat file option defined: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download32 BED file format help: http://genome.ucsc.edu/FAQ/FAQformat.html#format1 Please feel free to contact the mailing list support team again if you would like more assistance. Warm regards, Jen UCSC Genome Browser Support On 8/2/10 4:12 AM, Henning Gohlke wrote: > Hello, > > I would like to download genomic sequences by batch ( Chromosome + start > position end position). I hope it is possible to do it for example like with > the "Get DNA for" function > > I looked through the table browser but I was not able to find a way to only > extract the exact portion of DNA I need. Could you please tell me how this > can be done. > > > > Best wishes and thank you very much for your support. > > > > > > Henning > > > > SEQUENOM® > Henning Gohlke,PhD | Field Application Scientist | T: +49 (0)40 899 676 0 | > F: +49 (0)40 899 676 10 | E: > > [email protected] > > Sequenom GmbH | Mendelssohnstr. 15 D | D-22761 Hamburg | Amtsgericht Hamburg > HRB 57315 | Geschäftsführer: Edvin N. Munk > > > > > > THIS EMAIL MESSAGE IS FOR THE SOLE USE OF THE INTENDED RECIPIENT(S) AND MAY > CONTAIN CONFIDENTIAL INFORMATION. ANY UNAUTHORIZED REVIEW, USE, DISCLOSURE OR > DISTRIBUTION IS PROHIBITED. IF YOU ARE NOT THE INTENDED RECIPIENT, PLEASE > CONTACT THE SENDER BY REPLY EMAIL AND DESTROY ALL COPIES OF THE ORIGINAL > MESSAGE. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
