Dear Zhidong, The data for this assembly was obtained from NCBI and we were able to locate this page for you to use:
ftp://ftp.ncbi.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Ailuropoda_melanoleuca/AilMel_1.0/Primary_Assembly/localID2acc Hope this helps! Please don't hesitate contacting the mailing list if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "zhidong yuan" <[email protected]> To: [email protected] Sent: Tuesday, August 3, 2010 7:36:05 AM GMT -08:00 US/Canada Pacific Subject: [Genome] How could I map the annotation provided in panda database to UCSC genome browser? Hi, could someone tell me how to find the corresponding scaffold in UCSC Genome Browser to the one provided in the Giant Panda Database ( http://panda.genomics.org.cn/page/panda/index.jsp).? For instance, scaffold1020 corresponding which GL? in the UCSC Genome Browser? How could I map the gene annotation, regulate elements and ncRNA gene in panda database to the UCSC Genome Browser for some they only provide genome coordinate? Thank you. -- Zhidong _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
