Dear friends, I would like to check if a line in BED file belongs to a specific genomic region (e.g. start = chr1 100; end= chr1 1000). If the line is in reverse strand, do I need to convert its coordinate present in BED file by the following formula before checking?
start = (chromSize - lineEnd) + 1 end = chromSize - (lineStart - 1) Thanks a lot, Thong -- NGUYEN Trung Thong School of Mathematics, Statistics and Applied Mathematics NUI Galway, Ireland _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
