Hi Agnes, if you're on a human genome, than I think galaxy has a function for you that will immediately give you the data you need. Just upload your regions, then use this function: http://main.g2.bx.psu.edu/root?tool_id=aggregate_scores_in_intervals2
If you're on another genome, you would first need to get the conservation score wiggle tracks from the Table Browser, check the "send to Galaxy" option and then use this function with your regions. cheers Max On Thu, Aug 12, 2010 at 1:33 PM, Agnes Williams <[email protected]> wrote: > Hi, > I'm wondering if you could help me out with this. I have a list of ~600 > coordinate ranges, and I would like to prioritize these regions based on > conservation scores. Is there a way to do it so that the output file will > only give me the maximum score for each coordinate range? I can go to > "summary statistics" if I examine each region individually, but is there a > way to do this for a series of coordinate range? > Also, if I have chosen the species to include in the conservation track (so > I'm not using the default setting), would the scores be calculated using my > sets of species or it will still be calculated using the default setting? So > would my output file from the Table Browser follow my setting or the default > setting? > > thanks a million in advance, > AW > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
