I wrote a Java program to automatically retrieve a subset of data through
http://genome.ucsc.edu/cgi-bin/hgTables.
But I failed and it always returned me a page with a message “Search terms are
not very specific, only showing first 500 matching known genes.” The following
are the term I specified: ("hgsid", "167501411"), ("clade", "mammal"), ("org",
"Human"), ("db", "hg18"), ("hgta_group", "genes"), ("hgta_track", "knownGene"),
("hgta_table", "knownGene"), ("hgta_regionType", "genome"), ("hgta_doSchema",
"describe table schema"), ("position", "position"), ("hgta_outputType",
"gzip"),
("hgta_outFileName", “test”), ("hgta_doTopSubmit", "get output"),
("boolshad.sendToGreat", "0") and ("boolshad.sendToGalaxy", "0").
I will be very grateful to you if you could provide some suggestions about this
problem.
Regards,
MXMiao-Xin (Marcy) Li, PhD
L10-64, Dept of Psychiatry
Laboratory Block, Faculty of Medicine Building
The University of Hong Kong
21 Sasson Road, PokFuLam, Hong Kong
Tel: +852-2819-9559 (Office)
Tel: +852-3751-8744 (Dormitory)
Mailto: [email protected], [email protected]
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