Greetings,
I have two basic questions for phastcons.
1. Why some positions do not have phastcons values? How to treat these
positions? Is it ok to use zero for these positions?
2. When I use hgwiggle -doStats to extract phastcons value locally, I
find that the start and the end are different from what I supplied, following
is my command and the output. I use
-position=chr13:23654149-23654222 as the parameter for hgwiggle, but the output
display different values. What is the reason?
li...@server $ ~/tools/hgwiggle/hgWiggle -position=chr13:23654149-23654222
-doStats phastCons30way
# from file, Table: phastCons30way
# Chrom Data Data # Data Data Bases Minimum Maximum Range Mean
Variance Standard
# start end values span covered
deviation
chr13 23653329 23654352 1024 1 1024 0 1
1 0.580009 0.20296 0.450511
Thansk in advance and look forward to the reply.
kindly regards,
Xiaoqiao Liu
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