Hello Esti, I spoke to one of our developers about this, and I confirmed that we do not keep the codon_start attribute from GenBank in any of our tables.
-- Brooke Rhead UCSC Genome Bioinformatics Group Esti Kummer wrote: > Hello, > I'm trying to find the coding region of the mRNAs in the *mrna.fa* file. I > thought I have to use the 'cds' table in order to find it but I just figured > out that there is a qualifier of the CDS feature in the NCBI which called '* > /codon_start*' that indicates the first base of the first complete codon in > a CDS. > The M55024 sequence, for example, has a CDS of '1..455' but it has a > qualifier of codon_start which indicates that the translation starts only on > the third base. > Where can I find this information in yours tables? > Thanks in advance, > Esti > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
