Hi Colin These files are too large as custom tracks from both the transfer and database points of view. If you need to test you have the formats ready before submitting to the ENCODE project, you can just test with much smaller files - a small chromosome, or just the first N lines for example.
Cheers, Mike On Wed, Oct 29, 2008 at 8:56 AM, Colin Kingswood <[EMAIL PROTECTED]> wrote: > Hi, I am trying to test some tracks in the genome browser for submission for > the Encode transcriptome project. > > I seem to have a problem with uploading larger tracks. I tried both the > "upload a local file" method and also the url method. > I got an internal server error the first time, and the page just goes blank > and teh status says done with the URL method. > > I wondered if there is a maximum file size , or number of data points (as I > noticed the documentation I have been reading suggests using variable step > over bed format, as that can load more data points). Or is there a timeout > limit on the upload? > > Or have you any ideas why I can't seem to upload larger files? > > The file I have been trying today is 1.1Gb in variable step format. It has > 256,174,058 lines most of which will be data (there will be a track header > for each chromosome, and a file header). > > Colin. > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > -- Michael Pheasant Associate Project Scientist UCSC Genome Browser Email: [EMAIL PROTECTED] Skype: mpheasant Phone: +1-831-706-2689 Location: Engineering2 Room 515 Post: CBSE, UC Santa Cruz, MS:CBSE/ITI 1156 High Street Santa Cruz, CA 95064, USA _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
