[Genome] negative tStart tEnd protein blat

[Amit Indap]

Hi UCSC,

I was wondering about why blat lists negative values for the tStart/End  in 
this  psl result.

I was aligning an amino acid sequence against PDB records:

103     0       0       0       0       0       0       0       +       
NP_005347.3     509     123     226     1BHH    108     -152    -49     1       
103,    123,    -152,

The command I ran was:

blat Human2.5Updated.fa RefSeqAA.fa -prot -out=pslx -minIdentity=100 
blat100output.pslx

Have you seen this before? I'm a bit confused, so any help would be great.

Thanks!

Amit

Amit R. Indap
[EMAIL PROTECTED]


      
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