Dear sir: I downloaded the blastz result of mm9 vs hg18 from http://hgdownload.cse.ucsc.edu/goldenPath/mm9/vsHg18/axtNet/ . But I found the location numbers of hg seqs in those files are strange. For example:
3 chr21 9885041 9885155 chr12 5667727 5667849 - 771 GGTCAAGTAACTGAGGACAAGGATCAATAGAAACAAGGACACACTCTAATTTTATGATAAATATTTTATTCAAGAGTCACCGTATACAGAAAATTCAAAG---------------ATTAGTAAAGGCCCt GATTAAATCATTAAGGA-AGGGAATAAAAACACTATGAACTCATTC---TCTTTTAATTGGTAATTTTCCCAA---TCGCTCTTCATGCAAGATGTAGAGTGAAGGGCCCTCTCAGTTAGTAAAGCTTTT As described, the human seq block is located at "chr12 5667727 5667849"; But in fact, the latter sequence is at "chr1:42836935-42836958". You can confirm that with Blat tools. Thank you! I appreciate your time very much! Zhuqiang, Zhang Institute of Zoology, CAS, Beijing _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
