Hello Pete,
You can map coordinates in bulk using the LiftOver tool on
the website. This tool converts genome coordinates and
genome annotation files between assemblies. The input data
can be pasted into the text box, or uploaded from a file.
You will find the tool here:
http://genome.ucsc.edu/cgi-bin/hgLiftOver
We do not offer Expression data for the chimp genome in our
browser. You might contact the chimp sequencing center to
see if they have any ideas about gene expression in chimps:
http://genome.wustl.edu/genome.cgi?GENOME=Pan%20troglodytes
I hope this information is helpful to you. Please don't
hesitate to contact the mail list again if you require
further assistance.
Regards,
----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
Pete Shepard wrote:
> Dear UCSC Browser Folks,
>
> I have a set of human bed coordinates I would like to map to chimp
> coordinates. I would also like to know if these chimp coordinates are ever
> expressed. Can you tell me what is the best way to go about obtaining this
> data?
>
> Thanks
> _______________________________________________
> Genome maillist - [email protected]
> http://www.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
http://www.soe.ucsc.edu/mailman/listinfo/genome
