I recently retrieved the DNA sequences at the 5' and 3' junctions where an inversion occurs on 9q (#29497). This is a large inversion of almost 2 Mb. I was looking at ~ 500 bp of sequence at each end and to my surprise the sequences were 5' and 3' reads of the same sequence! I don't know how far back past the 500 bp this goes back and I am confused by this. Can you please explain this?
The ~500 bp sequences at each end of the "inverted sequence" are below: (85,698,400) AAAATCAATATAC-5' Breakpoint- TAAATATTCATCTAAAGATGTTAAAAAGATAGCAGGAGGTTACCCCAAAAGTAGAAGGAATTAAATAATAAA GGGCAGAAATTAGTGAAATAGTGAACAAACTAATGAAATAATGAACAAACATACACTAGTGAGGATTAACAA AGTCAAAAATTGTCTCTTTGAAGAGACTAATGAATTGGTAATTTTACTAGCTAGTGAAACTGCAAGAAAAAA AAGTGAGAGAAGGCACAAATAATCAGGAATGAAAAAGGGGACATGTGACTACACAGTCCCCTTTATTCATTA ATAAAGATATTAATGAATAAAAGACTATCATAAACAAACTTATGCCAATACATTTGAAAATTATATACAATG GTCAAATTCCTAGAAAAATAAACCTTATCAAAACTGGAGGAAAAGAAAATACTAATATGATTTAATTCATAA AACATACCCCCAAAGAAAATTTCCAGTCCCAAATGCTTAACAGGCTAATTCAACCA (85,698,900)........ .......(87,639,800) TCCCCCTATACCTGGAAAAGTGTGTGAAAATTGGTATTATTTCTTTCTTAAATGTTTGGTTGAATTAGCCTG TTAAGCATTTGGGACTGGAAATTTTCTTTGGGGGTATGTTTTATGAATTAAATCATATTAGTATTTTATTTT CCTCCAGTTTTGATAAGGTTTATTTTTCTAGGAATTTGACCATTGTATATAATTTTCAAATGTATTGGCATA AGTTTGTTTATGATAGTCTTTTATTCATTAATATCTTTAGCTGTGTAGTCACATGTCCCCTTTTTCATTCCT GATTATTTGTGCCTTCTCTCACTTTTTTTTCTTGCAGTTTCACTAGCTAGTAAAATTACCAATTCATTAGTC TCTTCAAAGAGACAATTTTTGACTTTGTTAATCCTCACTAGTGTATGTTTGTTCATTATTTCATTAGTTCAC TATTTCACCAATTTCTGCCCTTTATTATTTAATTCCTTCTACTTTTGGGGTAACCTCCTGCTATCTTTTTAA CATCTTTAGATGAATATTTA (87,640,324) -3' Breakpoint-GTATATT (87,640,330) Thank you for your assistance. _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
