Good Afternoon Joe:
Database tables, such as grp, chromInfo, etc... are the data referred
to in Step 3 of the mirror.html instructions:
3. Get the data for each individual genome assembly and installing databases
Instead of fetching the entire directory full of database tables, just
fetch individual tables.
The jk-install and related kent source tree build the CGI binaries.
Please note the additional documentation in the source tree files:
src/product/README.*
The htdocs are the static HTML pages for the WEB site.
--Hiram
Joseph W. Foley wrote:
> Hello,
>
> I want to host a minimal version of the Genome Browser locally, with
> just two or three genomes, and I am having trouble reconciling the
> dispersed documentation. I have found the "Procedure for Creating a
> Mirror Site for the UCSC Genome Browser" at
> http://genome.ucsc.edu/admin/mirror.html, and it refers to the
> "Minimal Browser Installation" instructions at
> http://genomewiki.ucsc.edu/index.php/Minimal_Browser_Installation,
> which are not clear to me.
>
> Specifically, at which step(s) of the general procedure at
> http://genome.ucsc.edu/admin/mirror.html should I deviate from the
> suggested rsync command and download only the "grp", "chromInfo",
> "trackDb", "hgFindSpec", "gold", and "gap" tables as mentioned at
> http://genomewiki.ucsc.edu/index.php/Minimal_Browser_Installation?
>
> Also, since I am building the executables from source per
> http://genome.ucsc.edu/admin/jk-install.html, is it still necessary to
> download the "htdocs" directory contents as in step 2 of
> http://genome.ucsc.edu/admin/mirror.html?
>
> Thanks.
>
>
> Joe
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