I set up a local Blat server using the instructions given in the FAQ section of your website. I expected the results from my query to be in psl format, but the data that was returned lacked a column indicating the strand (either "+" or "-") for the match. I used a command similar to the one given on the website: blat -stepSize=5 -minScore=0 -minIdentity=0 database.2bit query.fa output.psl
Can anyone tell me why I didn't get the strand entry for any of my results, or perhaps suggest another way to retrieve this information from the database? Thank you, Matt Schu Bioinformatics Grad Student Boston University _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
