Hello, I have a question on mutiz5way table in the conservation track of the Oct.2007 assembly of cow genome. I'm trying to fetch the 5-way MAF for, say, coding regions of some genes (or whole gene, 5'utr, 3'utr...)
A little example here, query the region chr3:21083267-21232422 1. make a custom track of RefGene coding exons in this region 2. intersect the multiz5way with custom track made in the previous step. 3. look at coordinates in the returned MAF and compare them to what are in the custom track, apparently they don't intersect... I am just wondering if I am doing something wrong and want to bring potential problem to your attention. Thanks a lot for your help, Wen _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
