Hi, I have a MAF alignments of 5 vertebrates downloaded from UCSC ( http://hgdownload.cse.ucsc.edu/goldenPath/phastConsPaper/vertebrate-mafs.tgz). I tried extracting regions through custom track. Upon submitting the file or even the URL to "add custom track" , I got error similar to this :
Unrecognized format line 2 of custom track: a score=259.0 (note: chrom names are case sensitive) * *Is this problem due to different assembly versions? My second question might not be relevant for UCSC but at least for the users of MAF. I have a set of subsequences from Human genome, for which I want to check conservation using the above MAF alignments. Which tools are suitable for this task ? Is there any local alignment program in your knowledge ? Thanking you in anticipation... Joshi _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
