Hello,
I am trying to use blat locally (usually it works great for me) to find whether
my designed probes are unique in the Rehsus genome. I have tried using blat for
this and found that it only find the best alignment and doesnt report other
alignment (with more mismatches, but still above 90% identity - i have prepared
input and db files files to test this). can you please help ?
Thanks a lot,
Shlomit Amar-Farkash
Hebrew university, Jeruslam
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