Hello, This data is available in our downloads area. From http://genome.ucsc.edu/ click on "Downloads" in the side blue bar. After locating the files you are interested in by navigating around in our downloads area, using ftp to actually get them is highly recommended. http://genome.ucsc.edu/FAQ/FAQdownloads#download1
For the latest Human (hg18), from the Downloads page navigate to Human, Multiple alignments of 16 vertebrate genomes with Human, to come to this location: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/multiz17way/* To link between the multiz17way.extFile identifier and the actual file name, you will need the extFile table. Again, for the latest Human (hg18), from the Downloads page navigate to Human, Annotation database, to come to this location and file: http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/extFile.txt.gz Try this and let us know if you have any problems, Jennifer Jackson UCSC Genome Bioinformatics Group Simon McGowan wrote: > Hi, > > Can you tell me if it possible to download the external data files (or the > data contained in the files) that are referred to in the multiz17way table > (field: extFile), as I would like to put this data in a local GBrowse > database to go with our own data. > > Many thanks, Simon > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
