Hello, You can ftp the files from our downloads server or save the files from the Table Browser.
For ftp, go to the main browser web site http://genome.ucsc.edu/ and click on "Downloads" in the left blue navigation bar. For the most recent data for human (hg18), click on Human, then click into the Annotation Database directory. Files named like hapmapSnps*.txt.gz (and maybe hapmapAlleles*.txt.gz) are the files related to the HapMap SNPs track. Instructions for ftp access: For saving from the Table browser, go to the main browser web site http://genome.ucsc.edu/ and click on "Table Browser" in the left blue navigation bar. Select the clade, genome, assembly for the latest human. Set group: Variation and Repeats and track: HapMap SNPs. The associated tables will be in the tables pull-down menu. Use the "View table schema" button to view table contents (maybe be a useful tool anyway, even if you use ftp). Make sure that region: genome and output format: all fields from selected tables. Name the output file and it will save to your computer. For more info about the track, go into the Human assembly browser and click on the track name for a full description of methods, sources, etc. Thanks! Jennifer Jackson UCSC Genome Bioinformatics Group Long, Jirong wrote: > Dear Sir/Madam, > > > > We are wondering whether you have a ftp address that we can use to > download the conservative score for each of the HapMap SNPs? Thanks. > > > > Best, > > > > Jirong > > > > ******************************************* > > Jirong Long, PhD > > Assistant Professor > > Vanderbilt Epidemiology Center > > Vanderbilt Ingram Cancer Center > > Eighth floor, Suite 800 > > 2525 West End Avenue > > Nashville, TN 37203-1738 > > Tel: 615-343-6741 > Fax: 615-322-0502 > > E-mail: [email protected] > > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
