Hi Jeniffer and all, Following your advice I intend to convert this acembly.txt from MM9:
http://hgdownload.cse.ucsc.edu/goldenPath/mm9/database/acembly.txt.gz into MM8, by uploading it to this website you suggested: http://genome.ucsc.edu/cgi-bin/hgLiftOver but somehow it fails to execute. Is there a way/tool where I can convert the acembly format into BED/Position format acceptable for the website? Yours, Gundala Viswanath On Wed, Mar 11, 2009 at 3:13 AM, Jennifer Jackson <[email protected]> wrote: > Hello, > > The "AceView Genes" track was included in the mm9 annotation set, but not in > mm8 (or mm7). > > To map individual genomic locations between assemblies, use the "Convert" > tool (top blue navigation bar) from within the starting assembly's browser > (in your case, mm9). > > To map larger data sets or entire tracks, the liftOver tool can be used. > There is a browser based version and a unix version. > http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#Convert > > Thank you, > Jennifer Jackson > UCSC Genome Bioinformatics Group > > Gundala Viswanath wrote: >> >> Dear all, >> >> I have no problem finding acembly.txt for MM9, >> but not for MM8. >> >> Is there a way I can download if? >> I can't find one in this url: >> >> http://hgdownload.cse.ucsc.edu/goldenPath/mm8/database/ >> >> - Gundala Viswanath >> _______________________________________________ >> Genome maillist - [email protected] >> http://www.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
