Hi guys with all the great utilities in the Browser/Tables, are people using it for aligning short reads (or assembled contigs) from say Illumina sequencing? is anyone using BLAT for this purpose for example? Im working with about 5 million single-end reads for a bacterial genome of about 6 MegaBases ... but highly plastic between strains ... the short reads can be condensed to about 5 thousand (mostly) non-overlapping contigs ...
Thanks Rudy _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
