Hello again, If you are only getting one gene, perhaps there are unintentional filters in your Table browser session. Please do these two things to extract all the data from a particular table using the Table browser:
1) On the Table browser's main form, bottom of first html block, find this sentence and click to reset all parameters to the default "To reset all user cart settings (including custom tracks), click here." 2) Next, start your query again from the beginning. When you get to "region:" set to "genome" for the complete table (all chromosomes), or select "position" and type in a chromosome using our format. For "output file:" specify a name and it will download to your computer. example chromosome name format: chr1 chr2 chr3 .... Or, once you have identified the table name associated with the track you want gene information from, navigate our downloads area to determine the path to the file (the html path is the same as the unix directory path). Download to a PC by clicking on the file name (ok for small files, not recommended for large files). To ftp the complete file, open a connection, cd to the file following the path you determined by navigating the downloads area, and use "get" to retrieve the file. To understand what the data columns represent for any table/file downloaded (Table browser, Downloads area, or ftp), use the Table browser. Set up the variables to the target table and click on the "View table schema" button. More help: (please note that the track "Known Genes" has been renamed to be "UCSC Genes" but the tables names are the same. http://genome.ucsc.edu/FAQ/FAQdownloads#download31 Jennifer Jackson UCSC Genome Bioinformatics Group He, Chunjiang [BSD] - MED wrote: > Hi, > Sorry I can find one gene in the table browser. But if I want to > download all gene location in chromosome, where is it in the ftp? I > have searched the answer before, but I cannot get my need. So may you > provide more detailed help. Thanks in advance. > Chunjiang > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
