Hello, I was trying to upload custrom track gff file to P. falciparum (Plasmodium falciparum) Genome Browser Gateway http://areslab.ucsc.edu/cgi-bin/hgCustom
I want to use newer P.falciparum sequence file. I downloaded this p.falciparum 5.5 gff file from http://plasmodb.org/common/downloads/release-5.5/Pfalciparum/Pfalciparum _PlasmoDB-5.5.gff And changed MAL1 to chr1, MAL2 to chr2, and so on. I uploaded the gff file to to P. falciparum (Plasmodium falciparum) Genome Browser Gateway, but got an error. Error File 'Pfalciparum_PlasmoDB-5.5chr.gff' - Unrecognized format line 24 of custom track: apidb|chr1 ApiDB supercontig 1 643292 . + . ID=apidb|chr1;Name=chr1;description=chr1;size=643292;web_id=chr1;molecul e_type=dsDNA;organism_name=Plasmodium falciparum;translation_table=11;topology=linear;localization=nuclear;Dbx ref=ApiDB_PlasmoDB:chr1,GenBank:NC_004325,taxon:36329 (note: chrom names are case sensitive) Unmodified gff file also got the same error message. Is it possible to use P.falciparum gff file with http://areslab.ucsc.edu/cgi-bin/hgCustom ? Or should I install a local genome browser and customize it? Thanks, Wonjong. SBRI. _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
