Hello, The data reported for the region chr11:56259903-56260492 on the track description page represents a subset of the data from the entire chain record (chr11_chainSelf.id = 1118118). That is why the score is approximate. The track description page explains the display conventions in the Description section.
We hope this helps to explain the data, Jennifer Jackson UCSC Genome Bioinformatics Group Atif Shahab wrote: > Hi, > > In the UCSC browser I get the following info > > *Human position:* chr11:56259903-56260492 size: 590 > *Strand:* - > *Human position: * chr20:56904056-56908860 > <http://ucsc.gis.a-star.edu.sg/cgi-bin/hgTracks?db=hg18&position=chr20%3A56904056-56908860> > > size: 4805 > *Chain ID:* 1118118 > *Score:* 38233 *Approximate Score within browser window:* 2221 > > But when I look into the mysql table for chr11. I find the following > > 725, 212246, 'chr11', 134452384, 18466024, 18469085, 'chr20', 62435964, > '-', 19465389, 19472380, 80309, 77.2 > > Notice that the chr20 start/end are different from what is show in the > browser. Does the browser use some formula to compute the start/end? > > Also the chain track displays boxes joined by single/double lines. > Which table contains the info regarding the start/end positions of these > boxes? > > - atif > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
