Greetings UCSC Genome Group,

Sorry if this question has already been answered but I could not find  
it in the archives or the faqs.

The documentation for blat
at
http://genome.ucsc.edu/goldenPath/help/blatSpec.html

states

  -fastMap    Run for fast DNA/DNA remapping - not allowing introns,

                requiring high %ID




The question is what is the %ID it requires?
Can that % be modified?

Thank you
Royden Clark

IT Specialist II
University of Virginia
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