Dear Sir/Madam:
Now that there is contig map provided by NCBI (ftp://ftp.ncbi.nlm.nih.gov/genomes/MapView/Rattus_norvegicus/sequence/current/initial_release/seq_contig.md.gz) for rn4, I would like to know how those chrN_random(s) are assembled at UCSC. There is no result returned by searching a rat contig in Genome Browser. I am wondering when the rat ctgPos.txt file will be available. Thanks! Wenwu Cui NextBio >Hello Xiaomin, >The ctgPos tables, which correspond to the "Map Contigs" tracks on the >human and mouse assemblies in the Genome Browser, is based on data >provided by NCBI. There is no "Map Contigs" track for the rat (rn4) >assembly, which was produced by the Atlas group at Baylor Human Genome >Sequencing Center (HGSC). >-- >Brooke Rhead >UCSC Genome Bioinformatics Group >Xiaomin Ying wrote: >> Dear UCSC colleagues, >> >> I couldn't find the file ctgPos.txt.gz from the rn4 database http://hgdownload.cse.ucsc.edu/goldenPath/rn4/database/ which is available for all other tracks. Could you please check? Thanks. >> Xiaomin >> _______________________________________________ >> Genome maillist - Genome at >> soe.ucsc.edu<http://www.soe.ucsc.edu/mailman/listinfo/genome> >> http://www.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
