Hello, Would you be able to confirm that the data was converted from the (-) strand to the (+) strand understanding our data formatting rules? http://genomewiki.ucsc.edu/index.php/Coordinate_Transforms
If so, please send me an example from this track that you believe is a problem (genomic coordinates plus unique data label) and we will examine the test case and provide feedback. Jennifer Jackson UCSC Genome Bioinformatics Group ahyiu wrote: > Dear Sir/Madam, > I've downloaded the datafile of hg18.snpArrayIllumina1M from table browser > under groups: Variation and repeats, track: SNP arrays, table Illumina 1M-Duo > (snpArrayIllumina1M) from your database. I would like to know whether you can > provide the TOP/BOT annotation adopted by Illumina. Because when I flipped > all > SNPs in the negative strand to positive strand, it is not compatible with the > HAPMAP data. I am wondering whether I've done something wrong or I > misunderstand the datafile. > > Best wishes, > Lee, Yiu-Fai > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
