Hello, To extract alignments for just chrM from any track, use the Table browser. http://genome.ucsc.edu/cgi-bin/hgTables
There are no RefSeqs, but data from these tracks would get you started: UCSC genes, Ensembl genes, RNA genes. Examine other tracks for additional lines of annotation evidence. In Table browser, the basic process is to: 1) set the clade, genome, assembly, group, and track 2) the default table is the primary table (click on "describe table schema" to view contents/format) 3) set region = chrM 4) output the default table by naming and saving locally. 5) or explore linked tables by choosing "output = selected fields from primary and related tables" to customize the output Table browser and file format help: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html http://genome.ucsc.edu/FAQ/FAQformat Jennifer Jackson UCSC Genome Bioinformatics Group Worthey, Elizabeth A. wrote: > Hi. Is there a precompiled and available equivalent of the refGene.txt > file containing only genes within the human Mitochondrial genome? Thank > in advance, > > > > Liz Worthey > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
