Hi there, I am currently trying to identify the transcription start sites (TSS) of a number of genes based on the information from CAGE sequencing tag provided in the Riken CAGE DB (http://gerg01.gsc.riken.jp/cage/)for mouse.
Unfortunately, the coordinates available for the CAGE tags are only available for the mm5 (May 2004)version of the mouse genome. I see that UCSC Genome Browser conversions for mm5 are only available up to mm8. Is it possible to obtain, the mm5-mm9 conversions? My concerns about doing a double conversion i.e mm5-mm8-mm9 would result in some loss of resolution, so I was wondering if there was any other way to go about this please? Thanking you in advance. Cheers, Rathi -- Rathi Thiagarajan Expression Genomics Laboratory / Grimmond Laboratory Institute for Molecular Bioscience University of Queensland, St. Lucia, QLD 4072 AUSTRALIA Tel +61 7 3346 2609 Fax +61 7 3346 2101 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
