Hello, The Table browser can extract sequence based on gene name from tracks in the group = Gene and Gene Predictions. Example tracks are UCSC Genes and RefSeq Genes. Set region = genomic. Paste or upload the list of IDs into the filter "identifiers". After setting output = sequence and submitting, one of the options is to limit output to the (estimated) promoter region. Be sure to name the output file and download as .gzip for large datasets.
http://genome.ucsc.edu/cgi-bin/hgTables http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html Jennifer Jackson UCSC Genome Bioinformatics Group Wang, Anyou wrote: > Dear staff at genome browser group > > I try to download the promotor sequnces of a list of specific mouse/human > genes (~1000 genes) in batch (e.g.XLR5A, XLR5C, GM9, ASZ1,CLDN6, TKTL1, > TAF7L,....), but I am clear how to. Could you please give me some info about > that? Thanks. > > Best regards, > > Anyou Wang > from UCLA > > > IMPORTANT WARNING: This email (and any attachments) is only intended for the > use of the person or entity to which it is addressed, and may contain > information that is privileged and confidential. You, the recipient, are > obligated to maintain it in a safe, secure and confidential manner. > Unauthorized redisclosure or failure to maintain confidentiality may subject > you to federal and state penalties. If you are not the intended recipient, > please immediately notify us by return email, and delete this message from > your computer. > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
