Hello, The track called "Self Chain" in the group "Variation and Repeats" contains this type of information. The track's description page explains the data format, methods, and source table(s). Data can be obtained in file format using ftp to our Downloads server.
If you need any Browser navigation help or have other questions about this dataset, please let us know, Jennifer Jackson UCSC Genome Bioinformatics Group Henning Kuich wrote: > Dear UCSC Genome folks, > I have just downloaded the chromFa.tar.gz of the Feb 2009 assembly, and as > you know it contains sequences that have not been mapped to a certain region > on a given chromosome (ie: chr17_gl000203_random.fa), as well as sequences > that are not even yet assigned to a specific chromosome > (ie: chrUn_gl000235.fa). I would like to know whether these random sequences > are partially redundant with the full chromosome assemblies (ie: chr17.fa), > or if I can be sure that there is no overlap. > > I would greatly appreciate the help, > > Henning Kuich > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
