Sridhar A Malkaram wrote:
> Could you please suggest what might be the problem here.

When you run kent programs such as hgLoadBed they expect to find
their .hg.conf file in their $HOME/.hg.conf location.

When you are running these as the Apache user as a CGI script, there really 
isn't
any $HOME for the Apache user.

You need to override the default location by using the environment
variable HGDB_CONF in your script to point to an hg.conf file
that has the read/write MySQL user enabled.

By the way, were you aware that users can load tracks with the
custom track features ?

--Hiram


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