Hello Annapurna,
Have you seen the Archeal Genome Browser?
http://archaea.ucsc.edu/
What you can do, in the absence of annotated promoters, is to decide you want
(for example) 1000 base pairs upsteam of your gene. To do that you can use
the Table Browser ("Tables" on the blue bar on the top of our main page).
When you select the gene annotation track you are interested in, and you toggle
"output format" to "BED" and press "get output" you can then select to be given
upstream coordinates.
Table Browser User's Guide is here:
http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html
I hope this helps,
Kayla Smith
UCSC Genome Bioinformatics Group
----- "ANNAPURNA KOLLURU" <[email protected]> wrote:
> Sir,
> I am working on a project in which I require promoter sequences of
> few
> bacterial and archeal genes for which promoter databases are not yet
> available. Please suggest me method to do so..
> Thanks..
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
Genome maillist - [email protected]
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