Hello, Kim, To find out conservation information as it regards to snps, you could use the Table Browser to do an intersection between conservation data and snp data. Here is a previously answered mailing list question that outlines how to do this: https://lists.soe.ucsc.edu/pipermail/genome/2006-February/009806.html
As for finding the nearest CpG island, one thing you might find useful is Galaxy's nearest feature tool. Here is the website for Galaxy: http://main.g2.bx.psu.edu/ Click on "Operate on Genomic Intervals", and then "Fetch closest feature". And in that vein, you might find some other tools as well that will help you with your data manipulation. I hope this information is helpful to you. Please don't hesitate to contact us again if you require further assistance. Kayla Smith UCSC Genome Bioinformatics Group ----- "Kim" <[email protected]> wrote: > Hello, > > I have about 4,000 SNPs and I am trying to collect as much information > about these SNPs as I can. > > As far as I can there is not much information I can gather from Table > Browser of UCSC and all the information I could get are below. > > #bin chrom chromStart chromEnd name score strand refNCBI > refUCSC > observed molType class valid avHet avHetSE func locType weight > > > I am looking to collect more information on conservation, proximity to > CpG islands, or any other information I can collect on these SNPs. > > Does anyone know where and how can I collect more information on these > SNPs. I cannot enter all by hand so I need a way to download them as a > batch. > > Thank you very much. > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
