Hi Xiaoyu, We are able to confirm and are discussing options to correct. Meanwhile, there are two work-arounds:
1) Use the newer data in the hg18 database 2) Continue to use the hg17 database and extract the information from the Table browser. Set the clade, genome, assembly, group and track (TBA Alignment). Use table encodeTbaAlign. Set the region to be that for ENr322 (chr14:98,458,224-98,958,223) and the output format as MAF. Name the file and download in gzip format. It processes very quickly. Thank you for alerting us to this issue, it has been around for a while! If you have any other feedback, it is welcomed, Jennifer Jackson UCSC Genome Bioinformatics Group Xiaoyu Chen wrote: > Hi, > > I downloaded the TBA alignment of ENCODE regions from the below website. > http://hgdownload.cse.ucsc.edu/goldenPath/hg17/encode/alignments/SEP-2005/alignments/TBA/ > > I found that the alignment of region ENr322 is exactly the same as the > alignment of region ENr332. I suspect this is an error becuase ENr322 > (chr14:98,458,224-98,958,223) and ENr332 (chr11:63,940,889-64,440,888) are > two different regions. Could you please help me check this? > > I will highly appreciate if you could help me to download the correct TBA > alignment of region ENr322. Thank you very much for your time and help! > > Xiaoyu > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
