Hello Raj, Can you please point me to the location of the gene expression record on the GNF site?
-- Brooke Rhead UCSC Genome Bioinformatics Group On 06/10/09 10:33, Raj wrote: > > Hi, > > Below are two gene expression records representing the same probe. However, the UCSC website record (shown below as record 1) is completely different from the original GNF website record (shown below as record 2). The two record values appear to be raw form. Looking at this data, the probe appears to be expressing in the UCSC record, while it is not in the GNF record. > > Can somebody explain why there is this discrepancy? > > 1. UCSC Table: > clade: Mammal > genome: Human > assembly: Mar. 2006 > group: Expression > track: GNF Atlas 2 > table: gnfHumanAtlas2All > 208553_at 158 > 38,15,27,48,201,25,361,23,156,491,383,420,49,328,76,68,664,406,330,139,331,224,58,42,217,53,62,28,38,23,25,100,324,191,53,30,29,49,15,56,67,29,96,72,93,54,25,34,110,81,118,24,38,25,25,69,17,15,82,36,59,32,13,55,22,29,76,70,16,32,120,29,208,18,86,37,26,42,31,23,48,24,30,38,66,48,63,45,53,68,31,30,38,44,59,28,22,31,38,95,25,26,34,21,18,85,58,29,17,28,17,38,35,13,75,81,47,23,253,23,55,131,88,18,82,18,24,46,40,95,19,61,16,32,60,28,24,91,19,79,29,50,47,53,29,68,55,34,110,60,69,108,26,43,23,22,72,83, > > > 2. From GNF (Novartis) site > 208553_at 8.3 6.3 6.55 5.35 6.35 6.55 5.1 8.05 > 6.4 6.9 7.8 7.75 9.8 8.85 8.35 8 8.9 7.35 > 7.8 9.65 5.55 6.85 5 5.1 6.05 6.7 4.6 6.7 > 6.75 5.7 5.9 5.4 6.5 7.15 4.8 8.1 6.5 > 6.45 6.5 7.65 5.9 8.2 8.75 6.15 5.75 5.35 4.45 > 4.95 7 6.45 7.4 6.8 6.2 7.65 7.4 5.9 6.9 > 5.4 7.65 6.65 6.4 5.7 6.05 6.25 5.3 6.65 > 5.65 5.95 6.15 6.8 7.65 6.45 6.75 5.6 5.6 7.1 > 5.65 6.95 5.6 > > Thanks, > > Raj > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
