Hello, LiftOver uses the information from the Chain and Net tracks to generate a "best mapping" location from one species to another based on the data in the "over.chain" file in Downloads->genome->LiftOver files. A better choice, if you wish to use the UCSC browser's data, is to view the Conservation track data (view along with individual Chain/Net tracks per-species).
Thanks, Jennifer Jackson UCSC Genome Bioinformatics Group Jennifer Jackson wrote: > hi everyone: > I have a simple question. that is can I find conservational region > using liftover? for example I want to find a conservational region of > human chr1 100000 120000 in mouse genome, can I use liftover to > archieve it? if I can. could you please tell me the program running > behind liftover? thank you verymuch :) > > --- message moved from genome-mirror to genome mailing list by moderator --- > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
