Mr. Hani Choudhry, You can download the CpG Island data using the Table Browser.
Click "Table" in the blue navigation bar at the top of the page and make the following selections: clade: Mammal genome: Human assembly: Mar. 2006 (hg18) or Feb. 2009 (hg19) group: Expression and Regulation track: CpG Islands table: cpgIslandExt region: genome output format: all fields from selected tables Click the "get output" button to see the results. In order to extract the sequences, go back to the Table Browser and change "output format:" to "sequence" and click "get output" again. Choose the sequence retrieval options you prefer (this is where you can choose to add the flanking regions, etc.) and click "get sequence" to see your results. Please don't hesitate to contact the mail list again if you require further assistance. Katrina Learned UCSC Genome Bioinformatics Group Hani Zubair wrote: > Dear Sir/ Madam, > It is my pleasure to write this email. I am postgraduate student from > University of Sheffield-UK. I am really looking information about CpG Island > in human genome. Could you please let me know how can I download all the CpG > islands in human genome from UCSC genome browser (starting and end sequences, > locations, and flanking region)? > Thanks and I appreciated your assistant. Look forward to your reply soon. > Regards, > Hani Choudhry > > > Mr.Hani Choudhry > Demonstrator, Biochemistry Dept. > KAU, KSA. > ........................................ > Msc Molecular Medicine > School of Medicine > University of Sheffield > UK > Email:[email protected] > Mobile:0044-7846124707 > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
