Download the compressed gene_info file from ncbi's ftp location, ftp://ftp.ncbi.nih.gov/gene/DATA/gene_info.gz
Execute the gunzip command on the downloaded file gunzip gene_info.gz First column is the taxonomy ID, for human it is 9606 Second column is the entrez-gene-id Third column is the gene symbol Fifth column are the gene synonyms. Hope this helps. vinodh -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Adjailia Malik Sent: Friday, June 26, 2009 9:46 AM To: [email protected] Subject: [Genome] Gene name to UCSC gene ID Hi, i have a list of gene names (more than 40.000), like Nr2f6,Zswim6, etc... and i want to convert it to UCSC geneID like uc002nfq.1m, uc003jsr.1, etc ... Wich table of the database should i use ? thanks. Malik _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
