Greetings!
I have a question about 'Variation and Repeats' group of data:
Two pairs of coordinates are given in the rmsk table - (genoStart, genoEnd)
and (repStart, repEnd). What is the difference?
For example (entries from the example supplied in 'Schema for RepeatMasker':
585 318 230 38 0 chr1 15264 15355 -249235266 - MIR3 SINE MIR
-119 143 49 5
585 239 338 148 0 chr1 18906 19048 -249231573 + L2a LINE L2
2942 3104 -322 7
at what position will the repeats actually start?
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Sincerely Yours,
Alexandra Rapoport
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Genome maillist - [email protected]
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