hi, i could load your sample tracks and they seemed ok to me. could you try reseting your cart http://areslab.ucsc.edu/cgi-bin/cartReset
if that doesn't work let me know. jpd --- On Tue, 6/30/09, Vladimir Kuryshev <[email protected]> wrote: > From: Vladimir Kuryshev <[email protected]> > Subject: visualization problem of custom tracks (the Ares Lab Malaria > Browser) > To: [email protected], [email protected] > Date: Tuesday, June 30, 2009, 3:42 PM > > Dear UCSC-Browser gurus, > > I've got a problem to visualize my custom tracks on the > Ares Lab Malaria Browser: > http://areslab.ucsc.edu/cgi-bin/hgTables?org=P.+falciparum&db=pf5 > > I uploaded my tracks using Tables Browser ("manage custom > tracks") and get a list of Hyperlinks to Genome Browser. But > as soon as I followed any of these links I could view > correct regions but without any info related to my tracks > (color bar, hidden other tracks etc). It looks like the > Browser could localize the region but viewed it with default > settings. > > If I add e.g. "&hgsid=13025" (the number could be > variable depending on uploading session) into URL address > line and refresh screen for one particular region I can see > the right view. But further going back to Table > Browser and retrieving a list of Hyperlinks to all > track regions their view again becomes with default > settings :( > > What could be a reason of such Browser "behavior"? > An example of my two custom tracks you can see below. > > BTW if I use the same tracks on http://genome.cse.ucsc.edu (e.g. with hg18) it > behaviors correctly without additional "&hgsid=.." > > Any help would be appreciated very much. > > Vladimir > > > TEST CUSTOM TRACKS: > > browser hide all > track name="TRACK_A" description="Description of TRACK_A" > color=0,0,255, visibility=2 > chr1 13540 > 13577 AstarR_6647 > 0 - > chr1 13825 > 13866 AstarR_368 > 0 - > chr1 14497 > 14534 AstarR_6647 > 0 - > chr1 15658 > 15690 AstarR_7067 > 0 + > chr1 16750 > 16787 AstarR_6647 > 0 - > > track name="TRACK_B" description="Description of TRACK_B" > color=255,0,255, visibility=2 > chr3 18042 > 18084 BstarR_240 > 0 + > chr4 28260 > 28302 BstarR_240 > 0 + > chr10 22332 > 22374 BstarR_240 > 0 + > chr4 1190069 > 1190109 BstarR_284 > 0 - > > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
