Hi, I used the table browser (clade: mammal, genome: human, assembly:hg18 mar. 2006, group: comparative genomics, track: conservation, table: primate cons (phyloP44wayPrimate), region chr7:116907253-11709594) to find the conservation score for CFTR. I also downloaded chr7.phyloP44way.primates.wigFix from the download section from your site to find the conservation score. However, when I extracted the lines 116873254-117061955 (because the 2nd l ine from the file corresponds to the chr7:34001) from the wigFix file, they look very different from the scores in table browser. What am I doing wrong?
The first few lines of output from the table browser is: 116907253 0.695748 116907254 -0.772598 116907255 0.659039 116907256 0.659039 116907257 0.769165 116907258 0.769165 116907259 0.695748 116907260 0.695748 116907261 0.769165 116907262 0.695748 116907263 0.695748 The lines 116873254-116873264 from the wigFix file is: -0.652 0.705 -0.890 0.705 -1.996 0.705 0.675 0.675 0.705 0.778 0.675 Thanks, Stephanie _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
