Dear Sir, When I compile kent source,I met some problems and I can't open local Genome browser and can't run utilities,such as following:
[Tue Jul 14 07:40:49 2009] [error] [client 127.0.0.1] /var/www/cgi-bin/hgTables: error while loading shared libraries: libssl.so.6: cannot open shared object file: No such file or directory, referer: http://localhost/ [Tue Jul 14 07:40:49 2009] [error] [client 127.0.0.1] Premature end of script headers: hgTables, referer: http://localhost/ [Tue Jul 14 07:56:47 2009] [error] [client 127.0.0.1] /var/www/cgi-bin/hgGateway: error while loading shared libraries: libssl.so.6: cannot open shared object file: No such file or directory, referer: http://localhost/index.html [Tue Jul 14 07:56:47 2009] [error] [client 127.0.0.1] Premature end of script headers: hgGateway, referer: http://localhost/index.html [r...@localhost getRnaPred]# make gcc -O -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o getRnaPred.o -c getRnaPred.c gcc -O -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /root/bin/x86_64/getRnaPred getRnaPred.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a -lm /usr/lib64/mysql/libmysqlclient.a -lz -lcrypto -lssl -lm -lnsl strip /root/bin/x86_64/getRnaPred [r...@localhost getRnaPred]# getRnaPred bash: getRnaPred: command not found [r...@localhost bedIntersect]# make gcc -O -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_x86_64 -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -o bedIntersect.o -c bedIntersect.c gcc -O -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /root/bin/x86_64/bedIntersect bedIntersect.o ../../lib/x86_64/jkhgap.a ../../lib/x86_64/jkweb.a -lm [r...@localhost yzd]# bedIntersect bash: bedIntersect: command not found Compile kent source as following : OS Information OS: Linux 2.6.27.25-170.2.72.fc10.x86_64 x86_64 System: Fedora release 10 (Cambridge) KDE: 4.2.4 (KDE 4.2.4) others Apache/2.2.11 (Unix) DAV/2 mod_ssl/2.2.11 OpenSSL/0.9.8g Apache/2.2.0 (Fedora) MySQL version: 5.0.77 1.CVS Access to Browser Code export CVSROOT=:pserver:[email protected]:/cbse cvs login Logging in to :pserver:[email protected]:2401/cbse CVS password: genome cvs co -P -rbeta kent 2. [r...@localhost]# yum list mysql* [r...@localhost]# yum install mysql* MACHTYPE=x86_64 export MACHTYPE $ mkdir -p ~/bin/${MACHTYPE} 3.Configure Apache serverand environment settings Add the following somewhere in /etc/httpd/conf/httpd.conf XBitHack on <Directory /var/www/html> Options +Includes </Directory> export MYSQLINC='/usr/include/mysql' export MYSQLLIBS='/usr/lib64/mysql/libmysqlclient.a -lz -lcrypto -lssl -lm -lnsl' export MYSQLDATA="/var/lib/mysql" export GLOBAL_CONFIG_FILE=/var/www/cgi-bin/hg.conf export WEBROOT="/var/www/html" export CGI_BIN="/var/www/cgi-bin" 4. $ cd kent/src $ make libs 5.To continue building the CGI binaries $ cd kent/src/hg $ make compile # make install DESTDIR=/var/www CGI_BIN=/cgi-bin DOCUMENTROOT=/html How to fix these problems? Please help me!Thank you in advance! Yuan Zhidong _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
