Hi Stephan, UCSC Genome Browser resources corresponding with NCBI Build 36.3 were not developed because the underlying genomic assembly between NCBI Build 36.3 and NCBI Build 36.1, which is the basis for our hg18 assembly, is the same.
The only changes between 36.1 and 36.3 were to NCBI's annotations. For purposes of translating genome coordinates, 36.1 and 36.3 are identical. Therefore, we suggest that you use the refFlat.txt file corresponding to 36.1 (hg18) in your analysis. For more information about the NCBI Build 36.3 release, please see the following link: http://www.ncbi.nlm.nih.gov/genome/guide/human/release_notes.html#36.3assembly Please don't hesitate to contact the mail list again if you require further assistance. Katrina Learned UCSC Genome Bioinformatics Group Stephan Nouwens wrote: > Dear Genome, > > I'm a student working at the Erasmus MC ( bioinformtics department ) and > working on creating a casava build on eland_paired data based upon the > 36.3 build of the genome to run Genome studie supplied by Illumina. > However I can't find the matching refFlat.txt file corresponding to this > build ( which means I'm missing the correct exon_coords file )? I only saw > the 36.1 and 17 available on your website. Is there some way to obtain > this file or create it by myself. > > cheers, > > stephan > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
