Hello, This SNP falls into the intron (non-coding region) of all of the protein tracks (mRNA & EST from Genank, too). Therefore, there was nothing to color code. If we have misunderstood you question, please clarify. Thanks, jen
------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Frauke Coppieters" <[email protected]> wrote: > From: "Frauke Coppieters" <[email protected]> > To: [email protected] > Cc: "Elke Mersy" <[email protected]> > Sent: Sunday, July 12, 2009 4:08:49 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] visualisation of rs58340380 in DNA sequence > > Dear, > > I have a question regarding the visualisation of a SNP in UCSC. I > wanted > to visualize the SNP rs58340380 in the DNA sequence of the OPA1 gene. > > With this purpose, I went in the "genome browser" to this gene and > selected the tracks SNP(128) and SNP(129). At this point, the SNP was > > visible in the genome browser. > Subsequently, I went to "DNA", selected "extended case/color options", > > and gave both SNPs (128) and SNPs (129) a red color. The result was > the > correct DNA sequence which however lacked coloring of the rs58340380 > SNP. Would it be possible to explain this? Thank you in advance! > > Best regards, > > Frauke Coppieters > Center for Medical Genetics Ghent, Belgium > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
