Hi Cynthia, We recommend contacting SO, as they are the organization that has the GFF3 specification. Hopefully some of their resources on this page will be able to help you: http://www.sequenceontology.org/resources/index.html. Please feel free to contact the mail list again if you require further assistance.
Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 9/28/10 8:57 AM, Cynthia Lee Page wrote: > I am converting annotation files from sgd and gff2 format to gff3 > format and am having some trouble annotating genes that have merged in > a yeast strain compared to it's reference strain. I am not passing the > gff3 validator on the SGD website. My immediate question is how do you > annotate merged genes - do you need to give a new and unique name? I > would like to find a resource for converting and for annotating. I > have searched your site and SO and some NCBI, but I am not getting any > thing about merged genes. Is there a resource either a mailing list or > web site that you can direct me too? > > Many Thanks, > > Cynthia Page > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
