Hi Vikram, You are correct; the phastCons .mod file in our download directory is out of date for the hg19 conservation track. Thank you for letting us know! We are working on fixing this and will let you know when it has been updated.
Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 9/28/10 12:36 PM, Vikram Agarwal wrote: > Hello, > > I noticed that the online version of the neutral .mod file for > vertebrates > (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/phastCons46way/vertebrate.mod) > is the outdated one in which baboon and wallaby are listed as > outgroups. Could your group provide the updated one by any chance? > This was corrected online for the tree (as described in the erratum of > http://genomewiki.ucsc.edu/index.php/Human/hg19/GRCh37_46-way_multiple_alignment) > but not for the phastCons .mod parameter files provided. > > Thank you, > Vikram > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
